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Miller AK, Brosnahan C, Pande A, Baker CF, Geoghegan JL, Kitson J, Gemmell NJ, Dowle EJ. Formalin-fixed paraffin-embedded (FFPE) samples help to investigate transcriptomic responses in wildlife disease Molecular Ecology Resources 2023

Doherty JG, Bhattarai UR, Ferreira S, Poulin R, Gemmell NJ, Dowle EJ. The proof is in the poo: non-invasive method to detect endoparasitic infection. Molecular Ecology Resources 2023

Jeunen GJ, Dowle E, Edgecombe J, won Ammon U, Gemmell N, Cross H. CRABS – A software program to generate curated reference databases for metabarcoding sequencing data. Molecular Ecology Resources 2023

Bhattarai UR, Poulin R, Gemmell NG, Dowle E. Genome assembly and annotation of the mermithid nematode Mermis nigrescens. bioRxiv, 2022.11. 05.515230

Katuwal M, Bhattarai UR, Phillips CB, Gemmell NJ, Dowle E. Whole genome assembly and annotation of the lucerne weevil Sitona discoideus. BioRxiv 2022

Bhattarai UR, Katuwal M, Poulin R, Gemmell NJ, Dowle E. A high-quality genome assembly and annotation of the European earwig Forficula auricularia. G3 2022

Freda PJ, Toxopeus J, Dowle EJ, Ali ZM, Heter N, Lambert-Collier R, Sower I, Tucker JC, Morgan TJ, Ragland GJ. Transcriptomic and functional genetic evidence for distinct ecophysiological responses across complex life cycle stages. Journal of Experimental Biology 2022

Zaiko, A., Greenfield, P., Abbott, C., von Ammon, U., Bilewitch, J., Bunce, M., Cristescu, ME., Chariton, A., Dowle, E., Geller, J., Gutierrez, AA., Hajibabaei, M., Haggard, E., Inglis, GJ., Lavery, SD., Samuiloviene, A., Simpson, T., Stat, M., Stephenson, S., Sutherland, J., Thakur, V., Westfall, K., Wood, SA., Wright, M. Zhang, G. Pochon, X. Towards reproducible metabarcoding data – lessons from an international cross-laboratory experiment. Molecular Ecology Resources 2022 22 (2): p. 519-538

Bhattarai, UR., Doherty, JF., Dowle, EJ., Gemmell, NJ. The Adaptiveness of Host Behavioural Manipulation Assessed Using Tinbergen’s Four Questions. Trends in Parasitology 2021 37 (7): p. 597-609

Dowle, EJ., Powell, THQ., Doellman, MM., Meyers, PJ., Calvert, MB., Walden, KKO., Robertson, HM., Berlocher, SH., Feder, JL., Hahn, DA., Ragland, GJ. Genome-wide variation and transcriptional changes in diverse developmental processes underlie the rapid evolution of seasonal adaptation. PNAS 117 (38): p. 23960-23969

Daly, EE., Trewick, SA., Dowle, EJ., Crampton, JS., Morgan-Richards, M. Conservation of pūpū whakarongotaua-the snail that listens for the war party. Ethnobiology and Conservation 2020 9

Selbach, C*., Jorge, F*., Dowle, E*., Bennett, J., Chai, X., Doherty, J., . . . Poulin, R. Parasitological research in the molecular age. Parasitology 2019: p. 1-10. (*authors contributed equally)

Schebeck M, Schuler H, Einramhof B, Avtzis D.N., Dowle E.J., Faccoli M, Battisti A, Ragland G.J., Stauffer C, Bertheau C. The Apennines as a cryptic Pleistocene refugium of the bark beetle Pityogenes chalcographus (Coleoptera: Curculionidae), Biological Journal of the Linnean Society 2019 127 (1): p. 24–33

Marshall, K. E., E. J. Dowle, A. Petrunina, G. Kolbasov and B. K. K. Chan. Transcriptional dynamics following freezing stress reveal selection for mechanisms of freeze tolerance at the poleward range margin in the cold water intertidal barnacle Semibalanus balanoides. 2018 bioRxiv

Mckean, N. E., S. A. Trewick, M. J. Griffin, E. J. Dowle and M. Morgan-Richards. Viability and fertility of hybrid New Zealand tree wētā Hemideina spp. (Orthoptera: Anostostomatidae). Journal of Orthoptera Research 2018 27 (2).

Schebeck, M., E. J. Dowle, H. Schuler, D. N. Avtzis, C. Bertheau, J. L. Feder, G. J. Ragland and C. Stauffer. Pleistocene climate cycling and host plant association shaped the demographic history of the bark beetle Pityogenes chalcographus. Scientific Reports 2018 8 (1): 14207.

Morgan-Richards M, Bulgarella M, Sivyer L, Dowle EJ, Hale M, McKean NE, Trewick SA. Explaining large mitochondrial sequence differences within a population sample.

Dowle, E.J., R.R. Bracewell, M.E. Pfrender, K.E. Mock, B.J. Bentz, G.J. Ragland.  Reproductive isolation and environmental adaptation shape the phylogeography of mountain pine beetle (Dendroctonus ponderosae). Molecular Ecology 2017 26, p. 6071-6084

Dowle, E.J., X. Pochon, J. C. Banks, K. Shearer, and S.A. Wood. Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates. Molecular Ecology Resources 2016 16, p. 1240–1254

Dowle, E., X. Pochon, N. Keeley, and S.A. Wood. Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high throughput sequencing. FEMS Microbiology Ecology 2015

Dowle, E.J., M. Morgan-Richards, F. Brescia, and S.A. Trewick. Correlation between shell phenotype and local environment suggests a role for natural selection in the evolution of Placostylus snails. Molecular Ecology 2015 24(16): p. 4205-4221.

Dowle, E.J., M. Morgan-Richards, and S.A. Trewick. Morphological differentiation despite gene flow in an endangered grasshopper. BMC Evolutionary Biology 2014, 14(1): p. 1-15.

Dowle, E.J., M. Morgan-Richards, and S.A. Trewick. Molecular evolution and the latitudinal biodiversity gradient. Heredity 2013 110(6): p. 501-510.

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